CDS

Accession Number TCMCG006C14388
gbkey CDS
Protein Id XP_022562252.1
Location complement(join(18913565..18913760,18916856..18917556))
Gene LOC106425342
GeneID 106425342
Organism Brassica napus

Protein

Length 298aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_022706531.1
Definition splicing factor U2af small subunit A isoform X2 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category A
Description contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83 identical, and each Arabidopsis homolog shows approximately 70 similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12836        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
ko05131        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
map05131        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009648        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030628        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036002        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048573        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0089701        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGGAGCATTTAGCTTCGATCTTTGGTACCGAAAAGGACAGAGTGAACTGTCCCTTCTACTTCAAGATTGGCGCTTGCCGTCACGGTGACCGCTGCTCTCGTCTCCACAACCGTCCTACCATCTCCCCAACACTCCTCCTCTCCAACATGTACCAGAGACCCGACATGATCACCCCCGGTGTCGATGCAAATGGCCAGCCCCTCGACCCGCGCAAGATCCAAGAGCACTTTGAGGATTTCTTCGAGGATCTCTTTGAGGAACTCGGCAAGTTTGGCGAGATTGAAAGCCTCAACATTTGTGACAACCTTGCTGATCACATGATTGGCAACGTCTATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCCGCTTTGCAGGCTCTGCAAGGTAGGTTTTATTCGGGGCGTCCCATCATTGCCGATTTCTCTCCTGTCACGGATTTTCGGGAAGCCACGTGTAGGCAGTATGAAGAGAACAACTGTAACCGTGGTGGGTATTGTAACTTTATGCACGTGAAGCTTGTTTCGAGGGAGCTGAGGAGGAAACTCTTTGGGAGGTCTAGGCGGTCTTACCGCAGGGGAAGTGGAAGTAGAAGCAGGAGTAGGAGTATAAGCCCTAGGCATAAGAGAGAGTATGACTGGCGTGATCCTCCTCACAGAGAGTTTAGTCACCGGGACAGAGATGGCGAGTTTTACAGGCATGGAAGTGGGAAAAGGAGTAGTGAGAGGTCGGAGAAGGGAGACAGGGACGGTTCAAGGAGGAGACATGGAAGCCCTCCTCCTAGACGAGGAGGGAGCCCTGGTGGTGGGAGAGAAGGAAGCGAGGAGAGGAGGGCAAGGATTGAGCAATGGAACAGAGAACGGGAGGAGAAGGAAGAGGGAGGAGGAGCATAA
Protein:  
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDANGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLFGRSRRSYRRGSGSRSRSRSISPRHKREYDWRDPPHREFSHRDRDGEFYRHGSGKRSSERSEKGDRDGSRRRHGSPPPRRGGSPGGGREGSEERRARIEQWNREREEKEEGGGA